Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADREVGTVKWFNDAKGYGFIQ---RDSGP-----DVFVHYRAIRGEGHRSLVEGQKVEFSVIQGQKGLQAEDVSKV
4ALP Chain:D ((8-79))
---RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTGP
General information:
TITO was launched using:
RESULT:
Template:
4ALP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37315 for 413 contacts (-90.4/contact) +
2D Compatibility (PS) -6835 + (NN) -1863 + (LL) 276
1D Compatibility (HY) -4800 + (ID) 1500
Total energy: -52037.0 ( -126.00 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_4ALP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ALP-query.scw
PDB file :
Tito_Scwrl_4ALP.pdb
: