Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MTLRNGVPSMTKDEKEKTHVDAIIERYKDLMVEIPPADRQPGLSLL-------WPVPAQPAIDKGVRQA------ENWLADQIEGQLWTAFAFGRDSLPTPMQKTAFEVAFLTRLQQRLVAARRSG
1DAR Chain:? ((476-599))
VGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDS-----SEMAFKIAGSMAIKEAVQKGDPVI
General information:
TITO was launched using:
RESULT:
Template:
1DAR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10009 for 804 contacts (12.4/contact) +
2D Compatibility (PS) -10936 + (NN) 1950 + (LL) 156
1D Compatibility (HY) -3600 + (ID) 950
Total energy: -3371.0 ( -4.19 by residue)
QMean score : 0.116
(partial model without unconserved sides chains):
PDB file :
Tito_1DAR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DAR-query.scw
PDB file :
Tito_Scwrl_1DAR.pdb
: