Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------MTAELGI--------FNGHLLQHLLAALWFLFCWVGYTRYATWKGR----DTACLASVLHLYREDWMRRLLLRDNRIADASVIGNLERNASFFASSTLIILAGILTLLGSTDRAVSVLADLPFVEEASRGLSE-LKLLCLAVVFV---------YAFFTFSWCMRQYNFAAILVGSAPMIGERNVGELERKSFAER-AARVISLAANQFNFGLRSYYFGLAMLA-----------WFINSWFFMLVT--AGVVLVLYRREFHSDVLEVMVYTETAIAESPREGEGEVPRG |
| 1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF--GENHAIMGVAFTWVMALACAAPPLVGW------SRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -130796 for 1861 contacts (-70.3/contact) +
2D Compatibility (PS) -25314 + (NN) -7483 + (LL) 812
1D Compatibility (HY) -16000 + (ID) 1800
Total energy: -180581.0 ( -97.03 by residue)
QMean score : 0.260
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