Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------MRPVLPLLLSLSLCAPALADWSG-PIEQPLWSLPAAPGLSRWLIVHNLSS--AAADGLYHVEVLERRQGQQPWQFQRLAA---HLALTEQALRASIVAPLKRGGVYPESYQFAYRQWQERQAAGQAPVCRRTVDECLRAPD
2E4M Chain:C ((4-146))
ERTFLPNGNYKIKSLFSDSLYLTYSSGSLSFLNTSSLDNQKWKLEYISSSNGFRFSNVAEPNKYLAYNDYGFIYLSSSSNNSLWNPIKIAINSYIICTLSIVNVTDYAWTIYDNNNNITDQPILNLPNFDINNSNQILKLEKL---------
General information:
TITO was launched using:
RESULT:
Template:
2E4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48076 for 844 contacts (-57.0/contact) +
2D Compatibility (PS) -12808 + (NN) 3117 + (LL) 480
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -59837.0 ( -70.90 by residue)
QMean score : -0.019
(partial model without unconserved sides chains):
PDB file :
Tito_2E4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E4M-query.scw
PDB file :
Tito_Scwrl_2E4M.pdb
: