Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIACLDLEGVLVPE-IWIAFAEKTGIDAL-K----ATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRE-RFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGY-------QLRQKDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDLKREFLKASSRSLSL
3M1Y Chain:A ((4-193))
QKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLK----ETDFHKSLILRVSKL--KNMPLKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIVEN-DALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLKQHATHCINEPDLALIKPL-----------
General information:
TITO was launched using:
RESULT:
Template:
3M1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119640 for 1365 contacts (-87.6/contact) +
2D Compatibility (PS) -18350 + (NN) -6409 + (LL) 652
1D Compatibility (HY) -6400 + (ID) 2000
Total energy: -152147.0 ( -111.46 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_3M1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M1Y-query.scw
PDB file :
Tito_Scwrl_3M1Y.pdb
: