Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPG----LAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAH--LDASLLLERIHPDKDVDGFHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGIN-----RQADGR-LVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLHD |
1A4I Chain:B ((4-294)) | --AEILNGKEISAQIRARLKNQVTQLKEQ---VPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A4I.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195550 for 2359 contacts (-82.9/contact) +
2D Compatibility (PS) -30518 + (NN) -15362 + (LL) 364
1D Compatibility (HY) -28400 + (ID) 6400
Total energy: -275866.0 ( -116.94 by residue)
QMean score : 0.580
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