Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGRTVEDVDMLNHHFRVCSATVYRPPGDGCQSATSQPSAWWMAAKESRSGQLRRVEHVAFEGHPAAVLAGRAVEDRAVVGEADGQAEADVGSVLRGVQLAFEVQLEHARLDAFQADGDVRVVHGLAFAAALLGADGEGHGVSVHVLLQLAWGRRRQRGGQTTGRRAGWPVLAAVGAARGLGIIRRRRSPTAHHQPTPEGMMKLPVLAVLGAALLLSACAKKEAEACASPDVKDQLMRIFLQGAITERSPEFKDSALRDVAIL----EKDPDSGVLSCVGTLSVPAGQQVVEGVLQYRIAPVAKSDYDYLLLDTAGANTTALAQRLNKALGQ |
1P4D Chain:A ((1-307)) | ----------------MMSIAQVRSAGSAGNYYTDKDN-YYVLGSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNRHRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEAL-------------ASTRVMTDGQSETVLTGNLVMALFNHDT-----SRDQEPQLHTHAVVANVTQH----------------NGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPG-----VPVEAFSVDPEIKMAEWMQTLKETGFDIRAYRDAADQRADLRTLTPG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1P4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20241 for 2129 contacts (-9.5/contact) +
2D Compatibility (PS) -28101 + (NN) -5316 + (LL) 4568
1D Compatibility (HY) -800 + (ID) 1900
Total energy: -51790.0 ( -24.33 by residue)
QMean score : 0.072
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