Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGRTVEDVDMLNHHFRVCSATVYRPPGDGCQSATSQPSAWWMAAKESRSGQLRRVEHVAFEGHPAAVLAGRAVEDRAVVGEADGQAEADVGSVLRGVQLAFEVQLEHARLDAFQADGDVRVVHGLAFAAALLGADGEGHGVSVHVLLQLAWGRRRQRGGQTTGRRAGWPVLAAVGAARGLGIIRRRRSPTAHHQPTPEGMMKLPVLAVLGAALLLSACAKKEAEACASPDVKDQLMRIFLQGAITERSPEFKDSALRDVAIL----EKDPDSGVLSCVGTLSVPAGQQVVEGVLQYRIAPVAKSDYDYLLLDTAGANTTALAQRLNKALGQ
1P4D Chain:A ((1-307))----------------MMSIAQVRSAGSAGNYYTDKDN-YYVLGSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNRHRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEAL-------------ASTRVMTDGQSETVLTGNLVMALFNHDT-----SRDQEPQLHTHAVVANVTQH----------------NGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPG-----VPVEAFSVDPEIKMAEWMQTLKETGFDIRAYRDAADQRADLRTLTPG


General information:
TITO was launched using:
RESULT:

Template: 1P4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20241 for 2129 contacts (-9.5/contact) +
2D Compatibility (PS) -28101 + (NN) -5316 + (LL) 4568
1D Compatibility (HY) -800 + (ID) 1900
Total energy: -51790.0 ( -24.33 by residue)
QMean score : 0.072

(partial model without unconserved sides chains):
PDB file : Tito_1P4D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1P4D-query.scw
PDB file : Tito_Scwrl_1P4D.pdb: