Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNVMLITGASRGIGAATALLAAERGYAVVLNYLRNREAAEALRQRIERQGGEALAVAADVAEEGDVERLFASIDERFGRLDVLVNNAGMLEAQTRLENIDAARLHRVFATNVTGSFLCAREAVKRLSTRHGGRGGSIVNVSSMASRLGSPNEYIDYAAAKGAIDSMTIGLAREVAAEGIRVNAVRPGLIDTEIHASG-GEPGRIERLKGGIPLGRGGTAEEVARAILWLASDEASYSTGTFIDVSGGR
1GCO Chain:B ((9-249))
---VVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAG-LENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFV--ENDIKGTVINMSSVHEKIPWP-LFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGG-
General information:
TITO was launched using:
RESULT:
Template:
1GCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114252 for 2044 contacts (-55.9/contact) +
2D Compatibility (PS) -26497 + (NN) -12794 + (LL) 608
1D Compatibility (HY) -18000 + (ID) 4850
Total energy: -175785.0 ( -86.00 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_1GCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GCO-query.scw
PDB file :
Tito_Scwrl_1GCO.pdb
: