Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTSHLIRIALPGALAAALLASQVSQAADLVPPPGYYAAVGER-KGSAG-SCP-AVPPP----Y-T-GSLVFTSKYEGSDSARATLNVKAEKTFRSQIKDITDM-ERGATKLVTQYMRSGRDGDLACALNWMSAWARAGALQ-SDDFNHTGKSMRKWALG-SLSGA-YMRLKFSS-SRP-LA-AHA----EQSREI-EDWFARLGTQ-VVRDWSGLPLKKINNHSYWAAWSVMSTAVVTNRRDLF-DWAVSEFKV-AANQVDEQGFLPNELKRRQRALAYHNYALPPLA-MI-AAFAQVNGVDL---RQENHGALQRLAERVMKGVDDEETFEEKTGEDQDMTDLKVDNKYAWLEPYCALYRCEPKMLEAKKDREPFNSFRLGGEVTRVFSREGGS |
| 3NFV Chain:A ((1-382)) | -GQVANTRIYAAEKLAKVKEKADSPLYAPAVKTLLRDADKALKMTPPSVMDKTMTADSGDKHDYMSMGPYWWPDPSKPDGLPYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTY-GQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVAAEEQRAKNNHGLAYDVQLTAYALYTGNQDLAMKTIQEFPEKRLFAQIEPDGKQPLELARTT---ALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYIGKPQSEWPYQ------QIKEWDKKQEEACWILRRASFFDPKAGYEAIGAQFRETPANKRIHLIYSLE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -36123 for 2746 contacts (-13.2/contact) +
2D Compatibility (PS) -36740 + (NN) -4442 + (LL) 416
1D Compatibility (HY) 4000 + (ID) 2200
Total energy: -75089.0 ( -27.34 by residue)
QMean score : 0.272
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