Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNILVR-----PSQTPKGQCWQVCLDQQAVNFRS---------ESEARRFVDRLEARLRAPHVLPELKQRTA
1GH9 Chain:A ((1-71))
MYIIFRCDCGRALYSREGAKTRKCVCGRTVNVKDRRIFGRADDFEEASELVRKLQEEKYGSCHFTNPSKRE-
General information:
TITO was launched using:
RESULT:
Template:
1GH9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1472 for 262 contacts (-5.6/contact) +
2D Compatibility (PS) -5942 + (NN) -244 + (LL) 144
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -10514.0 ( -40.13 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1GH9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GH9-query.scw
PDB file :
Tito_Scwrl_1GH9.pdb
: