Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MNSNRYPLPAQTGLVVAPGLPPKNSTLRPDQLNKRLSSAWHHLYDLCPELLKIDPP--DGLTILRGFLQWAAEQKAAWNWAMHLRLYCWLLQSPFGAKVTDEHLEVLM-------DASAARWTVDDTSANRGILLASQGGAHITQDWKAPQAGAGTRVPLERLDLPAPNWTFAYCAVPDPRLREFPGWKPLPARGSLVG
4D0Y Chain:A ((1-184))
AEVVNKGDYYSIQGKYDEIIVANKHYPLSKDYNPGENPTAKAELVKLIKAMQEAGFPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFDVIGTDGDLVTEEKAAQW-LLDHAADYGFVVRYLKGKEKETGYMAEEWHLRY-VGKEAKEIAESGLS----------LEEYYGFEG----GDYVD
General information:
TITO was launched using:
RESULT:
Template:
4D0Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13801 for 1332 contacts (-10.4/contact) +
2D Compatibility (PS) -18421 + (NN) -7764 + (LL) 936
1D Compatibility (HY) -2800 + (ID) 1450
Total energy: -43300.0 ( -32.51 by residue)
QMean score : 0.156
(partial model without unconserved sides chains):
PDB file :
Tito_4D0Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D0Y-query.scw
PDB file :
Tito_Scwrl_4D0Y.pdb
: