Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFFAATEVCERIR
3PJ9 Chain:C ((4-140))
--MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHK-RPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIEFFFKPNEIC----
General information:
TITO was launched using:
RESULT:
Template:
3PJ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50561 for 1036 contacts (-48.8/contact) +
2D Compatibility (PS) -14351 + (NN) -2370 + (LL) 964
1D Compatibility (HY) -14800 + (ID) 4650
Total energy: -85768.0 ( -82.79 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_3PJ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PJ9-query.scw
PDB file :
Tito_Scwrl_3PJ9.pdb
: