Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPTP----NDEESVLSLQVGP-HLCHLAEHPTDHLLMFTRLEGQGD-----------ATANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQL-LDRAQIHHQLEQLVAAAEELR
1RY9 Chain:A ((18-141))
----LVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAINIALV-NEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYS-INELVELH--RSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEIL-
General information:
TITO was launched using:
RESULT:
Template:
1RY9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51815 for 677 contacts (-76.5/contact) +
2D Compatibility (PS) -12021 + (NN) -8084 + (LL) 268
1D Compatibility (HY) -6000 + (ID) 600
Total energy: -78252.0 ( -115.59 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1RY9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RY9-query.scw
PDB file :
Tito_Scwrl_1RY9.pdb
: