Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPE-SLRDLLAARSVADPQALK-GPGGQITFVWQTP-LAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAPH
1K4K Chain:B ((1-213))
MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSL---------ETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKI-YLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR---
General information:
TITO was launched using:
RESULT:
Template:
1K4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142553 for 1544 contacts (-92.3/contact) +
2D Compatibility (PS) -21693 + (NN) -10849 + (LL) 528
1D Compatibility (HY) -15600 + (ID) 4000
Total energy: -194167.0 ( -125.76 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1K4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K4K-query.scw
PDB file :
Tito_Scwrl_1K4K.pdb
: