Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
1MJW Chain:B ((1-171))
-SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVNRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEI---VASFER
General information:
TITO was launched using:
RESULT:
Template:
1MJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91216 for 1339 contacts (-68.1/contact) +
2D Compatibility (PS) -18853 + (NN) -10840 + (LL) 468
1D Compatibility (HY) -20800 + (ID) 6100
Total energy: -147341.0 ( -110.04 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_1MJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MJW-query.scw
PDB file :
Tito_Scwrl_1MJW.pdb
: