Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA
4P7B Chain:C ((8-199))
--AIKLIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFKA
General information:
TITO was launched using:
RESULT:
Template:
4P7B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100951 for 1550 contacts (-65.1/contact) +
2D Compatibility (PS) -20735 + (NN) -11543 + (LL) 260
1D Compatibility (HY) -18000 + (ID) 5400
Total energy: -156369.0 ( -100.88 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4P7B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P7B-query.scw
PDB file :
Tito_Scwrl_4P7B.pdb
: