Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGK---------RTVLEMTGLLTNLSDQDLADIAAYFASQKMSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
1ETP Chain:B ((1-190))
--------------------AGDAEAGQGKVAVCGACHGVDGNSPAPNFPKLAGQGERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGMLDPLSDQDLEDIAAYFSSQKGSVGYADPALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH
General information:
TITO was launched using:
RESULT:
Template:
1ETP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26849 for 1429 contacts (-18.8/contact) +
2D Compatibility (PS) -19794 + (NN) -11098 + (LL) 1856
1D Compatibility (HY) -16000 + (ID) 7150
Total energy: -79035.0 ( -55.31 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1ETP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ETP-query.scw
PDB file :
Tito_Scwrl_1ETP.pdb
: