Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMDNHSSATEFHLLGFPGSQGLHHILFAIFFFFYLVTLMGNTVIIVIVCVDKRLQSPMYFFLSHLSTLEILVTTIIVPMMLWGLL------FLGCRQYLSLHVSLNFSCGTMEFALLGVMAVDRYVAVCNPLRYNIIMNSSTCIWVVIVSWVFGFLSEIWPIYATFQFTFRKSNSLDHFYCDRGQLLKLSCDNTLLTEFILFLMAVFILIGSLIPTIVSYTYIISTILKIPSASGRRKAFSTFASHFTCVVIGYGSCLFLYVKPKQ----T---Q---GVEY--NKIVSLLVSVLTPFLNPFIFTLRNDKVKEALRDGMKRCCQLLKD |
| 2LNL Chain:A ((39-323)) | ----------------------KYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPIWAASKVNGWIFGTFLCKVVSL----LKEVNFYSGILLLACISVDRYLAIVHATRTLT-QKRHLVKFVCLGCWGLSMNLSLPFFLFRQAY---HP-NNSSPVCYEVLGN---D-TAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHMG-QKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215405 for 1943 contacts (-110.9/contact) +
2D Compatibility (PS) -25367 + (NN) 5920 + (LL) 2516
1D Compatibility (HY) -23600 + (ID) 1750
Total energy: -257686.0 ( -132.62 by residue)
QMean score : 0.227
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