Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLKKYLKAAIYLSLLIYIYISVFSYSYKDISLNTVTDKEVTNLGGIVGSYLADILVQFLGLTSITVATTIICFLIFRPSKRLLKVLYSVLINLGICAMLPQLSLGITARYMHSGIIGNILINNCPFYIFIIATSTGIVGLIGWKRTIYLLFLLYKKVASLLAKVLFFRLYKAAEYPTPPLVVEEKHRAQITTRQQPKERQKKVIGEIFESSSEFKFPSIHLLSKAEESLQRKRLNEMESNKNLSLLEQVLSDFGVQGKVISVCYGPVVTLYKLEPQAGTKSARVIGLADDIARSMSALSARISIIRGQNAMGIELPNKEREIVMLRDLLESLEYQNANLNLPIALGKEISGKPVIADLAKMPHLLVAGTTGSGKSVAINTMILSLIYRLSPDACKMIMIDPKMLELSIYDAIPHLITPVVTEPKKAVIALKWIVKEMENRYRMMSYLNVRNVINYNQKITEAINSGIELERVVQVGFNSTTGKPLFEKMPIKMETFSYIVVIVDEMADLMLVAGKEIECSIQRLAQMARAAGIHIIMATQRPSVDVITGVIKANFPTRISFAVTSKIDSRTILGEQGAEQLLGMGDMLYMASGGKIIRVHGPFVSDEEVQNIVDHLKMQGEPNYMEEITKEDENSSAELKGETEGEEND-LYKQAVAIIQRDQKVSTSYIQRQLRIGYNRAANIVERTEKEGIISAPNYLGKREILVE |
2VE9 Chain:E ((9-67)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VE9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -26159 for 381 contacts (-68.7/contact) +
2D Compatibility (PS) -6159 + (NN) 39 + (LL) 52588
1D Compatibility (HY) -4000 + (ID) 1200
Total energy: 15109.0 ( 39.66 by residue)
QMean score : 0.734
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