Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKDADVAIDFSNPNLLFPLLDE--EFHLPLVVATTG--EKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLL-DDFDIELTEAHHNKKVDAPSGTLEKLYDVIV-SLKENV--TPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL
4YWJ Chain:B ((79-272))
----------------------------------------------------DVLIDFTHPSVTLKNIEQCRKARRAMVIGTTGFSADEKLL--LAEAAKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEIIEAHHRHKVDAPSGTALRMGEVVAQALGRDLQEVAVYGREGQTGARARETIGFATVRAGDVVGDHTVLFAAEGERVEITHKASSRMTFARGAVRAALWLEGKENGLYDMQDV
General information:
TITO was launched using:
RESULT:
Template:
4YWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107902 for 1337 contacts (-80.7/contact) +
2D Compatibility (PS) -19877 + (NN) -7821 + (LL) 4172
1D Compatibility (HY) -16000 + (ID) 3850
Total energy: -151278.0 ( -113.15 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_4YWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YWJ-query.scw
PDB file :
Tito_Scwrl_4YWJ.pdb
: