Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLTMLLDELKDMSFFNKGDICLIGCSTSEVIGEKIGTVGSMEVAETIFNALDVVSKETGVTFAFQGCEH------INRAITIEKSQYNPLTMEEVSVVPDVHAGGSLATYAFQHMKDPI-VVEHITVPCGIDIGQTLIGMHIKHVCVPVRTSVKQVGQAIV-TIATSRPKKIGGERAKYK---------
3Q9D Chain:A ((8-182))
--------------LELEDNVFLLLEGNLKRIFATPIGYTTFREFQNVVFNCAN--GQQEIANFFFEMLINGKLTQELAPQQKQAAHSLIAEFMMPIRVAKDIHERGEFINFITSDMLTQQERCIFLNRLARVDGQEFLLMTDVQNTCHLIRHLLARLLEAQKNPVGEKNLQEIQEEITSLKNHFDELTKA
General information:
TITO was launched using:
RESULT:
Template:
3Q9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33776 for 957 contacts (-35.3/contact) +
2D Compatibility (PS) -15657 + (NN) 9159 + (LL) 1768
1D Compatibility (HY) -6000 + (ID) 1100
Total energy: -45606.0 ( -47.66 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9D-query.scw
PDB file :
Tito_Scwrl_3Q9D.pdb
: