Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTLGLSSLGGTLEFYDFIIFVFFTSIIAKHFFPNTLSPIWSEINTYGIFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVIPTFALALMPTFNDLVGFGVDSMGLTPKNAHYLGYIAPVFLVLVRICQGVAVGGELPGAWVFVHEHAPQGQKNTYIGFLTASVVSGILLGSLVYIGIYMVFDKPVVEDWAWRVAFGLGGIFGIISVYL-RRFLEETPVFQQMKQDDALVKFPLKEVFKNSLFGISISMLITWVLTACILIFILFVPNFTLTHPNFHFTPFEKTYFQILGLVGIVSSIIFTGFLADKIKPHKVCMAFSAAFGFFGFLFFKEFYSNAPSLVNTIILYFLACF-CAGIMNFCPIFMSDVFSARIRFSGISFAYNIAYAITAGFTPQLSSWLNAKAIAVPESLQSYGLSFYILIVSLIAFITSLLMAPIYHKSNTQHEVSPTA |
2GFP Chain:A ((14-360)) | -------VLLVAVGQMAQTIYIPAIADMARDLNVRE--GAVQSVMG-----AYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTV--------------------------LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD--------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP---RTRLLTSYKTLFGN--SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV--LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDW--FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL-QNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPL------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -298848 for 2936 contacts (-101.8/contact) +
2D Compatibility (PS) -33567 + (NN) 12478 + (LL) 6180
1D Compatibility (HY) -15200 + (ID) 2250
Total energy: -331207.0 ( -112.81 by residue)
QMean score : 0.188
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