Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------------------------------MKISPSPRKLSKVSTSVSFLISFALY------AIGFGYFLLREDAPEPLAQA-GTTKVTMSLASINTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKEKS-VPKQVTTKDIVKEKDKQEESNKTSEGATSEAQAYNPGVSNEFLMK-------IQTAISSKNRYPKMAQIRGIEGEVLVSFTINADG--SVTDI------KVVKSNTTDILNHAALEAIKSAAHLFPKPDETVHLKIPIAYSLKED---------- |
| 3BMA Chain:A ((7-398)) | MHHNLGAEKRSAVATTIDSFKERSQKVRALSDPNVRFVPFFGSSEWLRFDGAHPAVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLEN--KQVVYVISPQWFSKNGYDPAAFQQYFNGDQLTSFLKHQSGDQASQYAATRLLQQFPNVAMKDLVQKLASKEELSTADNEMIELLARFNERQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEKNTSNNEMGMENYFYNEQIKKDLKKLKDSQKSFTYLKSPEYNDLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNPTPAPTYHLNERFFSKDWATYDGDVKEF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3BMA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 113047 for 1812 contacts (62.4/contact) +
2D Compatibility (PS) -29416 + (NN) -9875 + (LL) 164
1D Compatibility (HY) -6400 + (ID) 1400
Total energy: 66120.0 ( 36.49 by residue)
QMean score : 0.160
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