Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MS-LFFEEWGPILWQGFLETLTMTGITLVISLAI---GLPLGVFLTLTRKGGQSENLVAYSILNWVINILRSLPFIILLFLMIPVTRFVVGTTIGIQGVIMPLVVFTAPYIARLMESALLEVDRGVVEAYQAMGISTPKIIWSVVIREARSGIVLGLTIATIGLIGATAMAGLVGAGGLGTIAYQYGFQRFEPTVMYTTIIILIIMVQALQSFGNFLSRRLKKD
2AVX Chain:A ((1-171))
MSDKDFFSWRRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYT-------------------------------------------NYPEAWVSYYQAKNFLAID----PVLNPENFSQGHLMWND--DLFSEAQPLWEAARAHGLRRGVTQYLMLPERALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDE----
General information:
TITO was launched using:
RESULT:
Template:
2AVX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120088 for 1175 contacts (-102.2/contact) +
2D Compatibility (PS) -17388 + (NN) -432 + (LL) 5476
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -136332.0 ( -116.03 by residue)
QMean score : 0.338
(partial model without unconserved sides chains):
PDB file :
Tito_2AVX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AVX-query.scw
PDB file :
Tito_Scwrl_2AVX.pdb
: