Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGTNRARIDKSIENILKGKNIEEAKLHLPEITSTIKTGFIEKEISEQVYQSIIGVVSGKLSKIYDLDEDKCKEITSDFIKR--EQWINEIMELVEQDNVTGISDVLLKALKIALGETVKAEQNETYFVEKLLYEI------IFLSLENTMQGALETLEEGITIPQIRKEFIKPLADKLFEEDIKTEIPALVLG-KTTLAVINNKIADKLKNFGGF
1SGM Chain:A ((5-188))
-GDSREKILHTASRLSQLQGYHATG-----------------------LNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESS--DPVEAIQLFIKKTASQFDNTESIKGIPVGLLASETALISEPLRTVCMKVFKSWEAVFARKLMENGFAEEEANQLGTLINSMIEGGIMLSLTNKDKTPLLLIAEQIPVLVR-----
General information:
TITO was launched using:
RESULT:
Template:
1SGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47186 for 1331 contacts (-35.5/contact) +
2D Compatibility (PS) -18661 + (NN) -6043 + (LL) 2280
1D Compatibility (HY) -1600 + (ID) 1000
Total energy: -72210.0 ( -54.25 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1SGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SGM-query.scw
PDB file :
Tito_Scwrl_1SGM.pdb
: