Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLKMGFIGNGKSTNRYHLPFILERDNIEVKTIYNRNPKTATWDKIEGVHYTTDLDELLKDPEIQLITISTTQSSHFDYAKMVLENGKNVLVEKPFMMTYAEAKEIFELAKERGLLVQCYQNRRFDSDFLTAQKVIESGKLGELLEVEMHYDYFRPEIPESVHEFKFYDSYLYGHGCHTIDQVLSYFGKPDNIHYDVRQLLGEGRMNDYFDLDLYYGVTKVSVKSSYFRIKARPSFVLYGKKGTFTKETKDRQEEHLKLFYMPSNPDFGIDLPEHYGTLTYVDDAGVWHEEKVISEVGDYGRVYDDLYEAIINGKPKQVTDEETLLQMEILEKGVEACK |
3GDO Chain:A ((13-349)) | TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTE-EVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEV---------ATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGGSIVPANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDK-KTETIPSVNGSYLTYYRKIAESIREGAALPVTAEEGINVIRIIEAAMESSK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165412 for 2745 contacts (-60.3/contact) +
2D Compatibility (PS) -35845 + (NN) -17175 + (LL) 812
1D Compatibility (HY) -14800 + (ID) 4950
Total energy: -237370.0 ( -86.47 by residue)
QMean score : 0.465
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