Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEFF--EKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQE-NEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNFGALLQEPNYDRKIFQD
4KGN Chain:C ((7-156))
---NVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGD---WFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGF----------------
General information:
TITO was launched using:
RESULT:
Template:
4KGN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78938 for 1061 contacts (-74.4/contact) +
2D Compatibility (PS) -15914 + (NN) -6750 + (LL) 956
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -116246.0 ( -109.56 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_4KGN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KGN-query.scw
PDB file :
Tito_Scwrl_4KGN.pdb
: