Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEVHFVGAGPGDKELITLKGYQLLKEADVVIYAGSLVNPELLEYCKASCEIHNS---ASMNLIEIIDCMEAGVTAGKEVVRLQTGDFSIYGSIREQVEEMKKRSIPFTCTPGVSSFLGAASSFGVEYTVPEVSQSVIITRMAGRTPVPSRESLRSYAAHQTSMVIFLSVQGIRKVVSELIKGGYKPETPAAVIYKATWAEEKKVTGTLEDIAEKVTEAGITKTALIMVGDFLGEEFYYSKLYDKDFKHEYR
1PJQ Chain:A ((215-455))
RGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYD-RLVSDDIMNLVRRDADRVFVGKRHCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVT------G--ELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELA--QQVESPALIIVGRVVALRDKLNWFS---------
General information:
TITO was launched using:
RESULT:
Template:
1PJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156902 for 1917 contacts (-81.8/contact) +
2D Compatibility (PS) -24198 + (NN) -1955 + (LL) 456
1D Compatibility (HY) -16000 + (ID) 3200
Total energy: -201799.0 ( -105.27 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_1PJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PJQ-query.scw
PDB file :
Tito_Scwrl_1PJQ.pdb
: