Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIGLFCAAGFSTG-MLVNNMKIAADKEGIEAHIEAYSQGKIADYAKDLDVALLGPQVSYTLDKSKSICDEYGVPIAVIPMADYGMLDGVKVLKLALSLLETRKEA
1TVM Chain:A ((21-113))
KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSF-------G--DIPLVHGMPFVSG-VGIEALQNKILTILQG----
General information:
TITO was launched using:
RESULT:
Template:
1TVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69274 for 584 contacts (-118.6/contact) +
2D Compatibility (PS) -9778 + (NN) -5437 + (LL) 1072
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -87317.0 ( -149.52 by residue)
QMean score : 0.237
(partial model without unconserved sides chains):
PDB file :
Tito_1TVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TVM-query.scw
PDB file :
Tito_Scwrl_1TVM.pdb
: