Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNYKTIKSDGIVEEEIKKSRFICHLKRVESEEEGRNYITQIKKAHYKANHSCSAMVIGEKGDIK--RSSDDGEPSGTAGIPMLTVLEKQGLTNVVAVVTRYFGGIKLGAGGLIRAYSGSVANTIKEIGVVEVKEQIGIRIQLTYPQYQTFDNFLKEHHLQEFETEFLEAVTCKIYVDPKEFEHTITNLTEFYQGKALLTEEGSQIVEIPFKAETDK
1VI7 Chain:A ((3-208))
LMESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEEE------------
General information:
TITO was launched using:
RESULT:
Template:
1VI7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85826 for 1552 contacts (-55.3/contact) +
2D Compatibility (PS) -22012 + (NN) -4752 + (LL) 1048
1D Compatibility (HY) -10400 + (ID) 3050
Total energy: -124992.0 ( -80.54 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1VI7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VI7-query.scw
PDB file :
Tito_Scwrl_1VI7.pdb
: