Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFENIIYGI-DGNVATIMLNRPDISNGFNIPMCQEIIDAIRLVSENKDVMFLVIEAQGPIFSIGGDLKVMKAAVESDDISSLTKIAELVNQISYDLLQLEKPVVMCVDGAVAGAAANIALAADFVIASKKSKFIQAFVGVGLAPDAGGLLLLSKSIGITRAVQLALTGESLSAEKAEALGIVYKLCESDKIGKIKDQLLKRLSRHSINSYQAIKSLAWEAAFKDWEQ-Y-KKLE-LQLQESLAFKQDFKEGVRAHADRRRPNFLGK
3QK8 Chain:A ((11-266))
-DFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDET--IGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSLNH----WYRMFGPTFETSLGLEFLGFTGPDVQEGLAAHRQKRPARF---
General information:
TITO was launched using:
RESULT:
Template:
3QK8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162190 for 2169 contacts (-74.8/contact) +
2D Compatibility (PS) -28266 + (NN) -13706 + (LL) 1260
1D Compatibility (HY) -13200 + (ID) 3050
Total energy: -219152.0 ( -101.04 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_3QK8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QK8-query.scw
PDB file :
Tito_Scwrl_3QK8.pdb
: