Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKKIIAVDLDGTLLHNNNTISDYTADTLRKVQAQGHKVIITTGRPYRMALAHY-LRLDL---KTPMINFNGALTHIPEKKWAFERSATIDKKLLLETLNLSDAIQADFIASEYRKNFYITMDNR-DKINPQLFG--VNEITDKMALDVTKITRNPNALLMQTRHKDKYELAKELRQHFNHELEVDSWGGPLNILEFSPKGVNKAYALKHLLKSLNLSQENLIAFGDEHNDTEMLAFAHTGYAMKNANPTLLPYADQQIQWTNEEDGVAKTLEKLLL |
| 1RKQ Chain:A ((3-270)) | LAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGV-HNYLKELHMEQPGDYCITYNGALVQKAADGSTVA-QTALSYDDYRFLEKLSREVGSHFHAL-DRTTLYTANRDISYYTVHESFVATIPLV--FCEAEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTV-LKS-APYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVANFV-TKSNLEDGVAFAIEKYVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -81978 for 2290 contacts (-35.8/contact) +
2D Compatibility (PS) -27590 + (NN) -8586 + (LL) 312
1D Compatibility (HY) -14000 + (ID) 3450
Total energy: -135292.0 ( -59.08 by residue)
QMean score : 0.452
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