Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGRLIALGLVSLGALELYKNRKTIKDSYQNTKIETDSAKLKLERIKNDLAIISQEKEKIRLISQELNHKFQVFNKDIQPRLEEINQRMAKYQEKDE
2XDJ Chain:A ((21-67))
------------------------------------------LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL---------
General information:
TITO was launched using:
RESULT:
Template:
2XDJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5087 for 180 contacts (28.3/contact) +
2D Compatibility (PS) -5260 + (NN) -2225 + (LL) 4044
1D Compatibility (HY) -400 + (ID) 350
Total energy: 896.0 ( 4.98 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_2XDJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XDJ-query.scw
PDB file :
Tito_Scwrl_2XDJ.pdb
: