Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNSEKVLNLIGLAQRAGRLITGEELVIKAIQNQQVSLIFLANDAGPNLTKKVTDKSNYYKTEVSTV-FSTLELSDALGKP--RKVVAVADAGFSKKMRTLMA
3CPQ Chain:A ((7-103))
----MDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSN-IMELVE
General information:
TITO was launched using:
RESULT:
Template:
3CPQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60893 for 744 contacts (-81.8/contact) +
2D Compatibility (PS) -10199 + (NN) -3832 + (LL) 84
1D Compatibility (HY) -6000 + (ID) 1250
Total energy: -82090.0 ( -110.34 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3CPQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CPQ-query.scw
PDB file :
Tito_Scwrl_3CPQ.pdb
: