Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLGCLGVLMSIPFFIVVIVTIIFSSSQGDCQVTPDLSTQFVTSSDSASQTDWTKKGSIANVTAGKVFHAWVSKGLS---GASAAGIVGWVNSEGGFGKYSWNYRYVTTAELKNEGYTFYNPAKLGYQIMKSVGTVGK
1QQY Chain:A ((8-44))
--------------------------------------------------------------------LARKLKSMGMDGFHGYSLANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQLNSKWWCKSNSHSSANACNIM
General information:
TITO was launched using:
RESULT:
Template:
1QQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15131 for 167 contacts (-90.6/contact) +
2D Compatibility (PS) -3580 + (NN) -669 + (LL) 4340
1D Compatibility (HY) -1600 + (ID) 450
Total energy: -17090.0 ( -102.34 by residue)
QMean score : 0.053
(partial model without unconserved sides chains):
PDB file :
Tito_1QQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QQY-query.scw
PDB file :
Tito_Scwrl_1QQY.pdb
: