Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKDEMIAKGAKYIQSIYQDPFIQGIIKGRLDHDVICHYLQADNIYLGKFADIYALCLAKSDNLRDKQFFLEQIDFTLNRELADGEGPHQALAAYTNRSYQDIIEKGVWYPSADHYIKHMYFHFYENGIAGALAAMSPCPWIYHQLAKKIIEENQFLNGNPFNNWITFYANDTVEELMENYFRMMDYYAQNLSKEKQADLVDAFVKSCQMRDVFFKWQ
2GM8 Chain:A ((11-216))
-VTGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMA----NYEALLKEVGLSLRDAAEAE-PNRVNVSYMAYLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKKWASVYLSPEYRGLVERLRAVLDSSGL-----SAEELWPYFKEASLYELEFWQAA
General information:
TITO was launched using:
RESULT:
Template:
2GM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141155 for 1676 contacts (-84.2/contact) +
2D Compatibility (PS) -21714 + (NN) -4060 + (LL) 320
1D Compatibility (HY) -8000 + (ID) 2100
Total energy: -176709.0 ( -105.43 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_2GM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GM8-query.scw
PDB file :
Tito_Scwrl_2GM8.pdb
: