Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIIIGADTAGSKLKDVVKDFLVGENFEVVD---VTQDGQD-FVDVTLAVAAEVNKQEENLGIVIDAYGAGPFMVATKIKGMVAAEVSDERSAYMTRGHNNSRMITMGSEI--VGEGLAKNIAKGFVNGKYDGG-RHQIRVDMLNKMC
1USL Chain:E ((12-153))
MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALA--IVDAFVTTPWSKAQRHQRRIDILAEYE
General information:
TITO was launched using:
RESULT:
Template:
1USL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89110 for 1134 contacts (-78.6/contact) +
2D Compatibility (PS) -14694 + (NN) -9074 + (LL) -16
1D Compatibility (HY) -6400 + (ID) 2250
Total energy: -121544.0 ( -107.18 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1USL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1USL-query.scw
PDB file :
Tito_Scwrl_1USL.pdb
: