Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRVHITSIYGQSPRSIALISQKLVKDVGRQLGYDEMGIYFYNDHAETHGERSTRMDGIIAGLGRGDIVVFQVPTWNSTEFDELFLDKLQAY-GARIITFVHDIVPLMFESN--FY-----------LLDRVIDMYNRSDVVILPTKAMHDYLIEK----------------------GMTTSKVLYQEVWDHPVNIDLP-------------------------------RPECQKVLSFAGDIQRFPFVN----DWK------ENIPLIYYGDGSRL---------------------NSEANVHAQG----WKDDVELMLSL-SKRGGFGLCWSEDREELVERRYSRMNASYKLSTFLAAGLPIIANHDISSRDFIKQHGLGFTVET--LEEAVEKINNME------KETYDSYVENVEKIATLLRNGYITKKLLIDAVHMLYR |
| 3S28 Chain:A ((406-766)) | --------------------------------------------------------------GKPDLIIGNYSDGN---LVAS---LLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD-TKGAFVQP-----------ALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRI----EEKYTWQIYSQRLLTLTG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3S28.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158750 for 1920 contacts (-82.7/contact) +
2D Compatibility (PS) -27213 + (NN) -17253 + (LL) 5892
1D Compatibility (HY) -2800 + (ID) 1700
Total energy: -201824.0 ( -105.12 by residue)
QMean score : 0.462
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