Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQSIEKVHDDAERDRWMSAQETLDYGFIDAIMENNNLQ
3QWD Chain:B ((3-190))
LIPTVIET----ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGG-QG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPET--
General information:
TITO was launched using:
RESULT:
Template:
3QWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111793 for 1443 contacts (-77.5/contact) +
2D Compatibility (PS) -20040 + (NN) -8369 + (LL) -92
1D Compatibility (HY) -23200 + (ID) 5850
Total energy: -169344.0 ( -117.36 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3QWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QWD-query.scw
PDB file :
Tito_Scwrl_3QWD.pdb
: