Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIRKLVVMSDSHGDRDI--VKDIKNHYL--GKVDAIFHNGDSELPSSDPI---W-EGIHVVTGNCDYDSGYPEVLVTKIDNTVIVQTHGHLHQINFTWDKLDLLAQQEDADICLYGHLHRADAWKNGKTIFINPGSVLQPRGP---INEKLYAVVTITDSKVLVEYYTRQHQPYPNLTKEFSR
1Z2W Chain:A ((11-189))
---MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKK
General information:
TITO was launched using:
RESULT:
Template:
1Z2W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57598 for 1300 contacts (-44.3/contact) +
2D Compatibility (PS) -18857 + (NN) -12534 + (LL) 556
1D Compatibility (HY) -9600 + (ID) 2100
Total energy: -100133.0 ( -77.03 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1Z2W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z2W-query.scw
PDB file :
Tito_Scwrl_1Z2W.pdb
: