Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLRRSERMVVISNYLINNPYTLTSLNTFASKYGAAKSSISEDIAIIKKAFEQAQIGDIKTVTGASGGVIFTPTIAEAEAKEIVEELRQRLSENDRILPGGYI---YLSDLLSTPKMLQSIGRIVANAYRGQKIDAVMTVATKGVPLANAVANVLDVPFVIVRRDLKIT-EGSTVSVNYASGSSGRIEKMFLSKRSLKPNSRVLIVDDFLKGGGTVSGMISLLSEFDSTLVGVAVFAENAQ-EQREKM-----AYKSLLRVSEIDVKNNRVSVEAGNIFD
1Y0B Chain:A ((2-185))
---------------------------------------------------------------------------------NAMEALKRKIEEEGVVLSDQVLKVDSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQPGRDELVKLGYRVESLARIQSLEEGKVSFVQE------
General information:
TITO was launched using:
RESULT:
Template:
1Y0B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122998 for 1386 contacts (-88.7/contact) +
2D Compatibility (PS) -19057 + (NN) -7844 + (LL) 6464
1D Compatibility (HY) -12400 + (ID) 1900
Total energy: -157735.0 ( -113.81 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0B-query.scw
PDB file :
Tito_Scwrl_1Y0B.pdb
: