Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIENYCQDYCLETIFPKHYFKDL--QVITLTAGQSVCKQGEQLEYLHYIVKGRFKIVRRLFNGKEHILDIKTKPTLIGDIELLTNR-QIVSSVIALEDLTVIQLSLKGRKEKLLTDATFLLKLSQELAQAFHDQNIKASTNLGYTVKELLASHILAIEEQ--G--YFQLELSSLADSFGVSYRHLLRVIHDMVKEGLIQKEKPKYFIKNRFALESLNIQP
1ZYB Chain:A ((29-232))
-----------LCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDAQKLL------
General information:
TITO was launched using:
RESULT:
Template:
1ZYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98827 for 1298 contacts (-76.1/contact) +
2D Compatibility (PS) -20976 + (NN) -4288 + (LL) 952
1D Compatibility (HY) -11200 + (ID) 1700
Total energy: -136039.0 ( -104.81 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_1ZYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZYB-query.scw
PDB file :
Tito_Scwrl_1ZYB.pdb
: