Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYSFEELLATMTLITAAEIEDKI-DSNQDFVLFIGRISCPFCHLFVPKIVEVADED--EFELFHLDSEDFDHWTANKEFRNKYDIPTVPGLMVVKNG-TI-KVKCDSKMTKEEIREFIG
3VFI Chain:A ((4-102))
------------SLSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAE------KTMAELNIRTLPSLALFVDGMIREVFS-GTMN-KSDLRYWIN
General information:
TITO was launched using:
RESULT:
Template:
3VFI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78996 for 665 contacts (-118.8/contact) +
2D Compatibility (PS) -9762 + (NN) -975 + (LL) 1908
1D Compatibility (HY) -5600 + (ID) 800
Total energy: -94225.0 ( -141.69 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3VFI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VFI-query.scw
PDB file :
Tito_Scwrl_3VFI.pdb
: