Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --------------MADVPLDAQERLELC----------DLLEELGPAVATLIEGWTA--HDLAAHIVLRERDL---VAGLCI---------------VLPGP----FQRFAERRRARLAQSKDFTWLVAR-IRSGPPMGF-----FRIGWVRTL---ANLNEFFVHHE---------DVRRASGRGPRSLTPEMDAALWRNVRR--GSHFLSRRLHGC----GLEIEWVGTGK-----RVRVRSGEPTARLTGPPGELLLYVFGRRAV----------ARVEVSGPLEAIAAVHRTHFGM |
4R1D Chain:B ((1-301)) | MDKTGWITHCFGRFLIDLPPDAVINAGYYLWGDRIEYLDDKPTELAARVDRLEQEWRTQRHKSKGNMFLRKIDFGNESVGLLSWSSEVASKTYLLDTYVTSKPTWHVYRWKGKVSVDREQHAVEISRALARNLRSRAPKEIPSEPGFCIDHAYIAGDSFQVERFGVGVTFPEHPGARFEFRSSTGAELNSLLERVDGFVQNMLSTFAGMETLRKGKHPVGSLPGEEYLVAGSDKGQRGYTFMWEVQGKEESLTEPNLTAGLAVLERSNENGKPPPPAFKSDKEALELWDTIVDSIRVRPTS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60199 for 1270 contacts (-47.4/contact) +
2D Compatibility (PS) -22348 + (NN) -77 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 2450
Total energy: -89074.0 ( -70.14 by residue)
QMean score : 0.197
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