Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTSTPSPVFGNQEFHYTREDFQQVRERLYRLTGISLAESKAQLVYSRLSRRLRLLRLGSFAEYFTHLDREPGEQQLFVNALTTNLTAFFRERHHFPLLADLARRQLQRHRPLRIWSAAASTGEEPYSIAITLVEALGSFDPPVKIVASDIDTGVLDCARQGVYPLERLEQMPAPLKKRFFLRGTGPNAGKARVVEELRQLVEFRQINLLEADWSIAGELDAIFCRNVMIYFDKPTQTRLLERMVALLRPEGLFFAGHSENFVHASHLVRSVGQTVYSPA
3MGG Chain:A ((34-140))
-------------------------------------------------------------------------------------------------------------PPGAKVLEAGCGIGA----QTVILAKNN----PDAEITSIDISPESLEKARENTEK-----------------------NG--------IKNVKFLQANIFSLPF-EDSSFDHIFVCFVLEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCL
General information:
TITO was launched using:
RESULT:
Template:
3MGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100711 for 801 contacts (-125.7/contact) +
2D Compatibility (PS) -11010 + (NN) -1023 + (LL) 11020
1D Compatibility (HY) -2000 + (ID) 1200
Total energy: -104924.0 ( -130.99 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_3MGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MGG-query.scw
PDB file :
Tito_Scwrl_3MGG.pdb
: