Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKSLHQYAHVFSRLSLFGLAFAAAAQAQSQSLTVISFGGATKAAQEQAYFKPFERSGGGQVVAGEYNGEMAKVKAMVDVGKVSWDVVEVESPELLRGCDEGLFERLDPARFGDPAQFVPGT--------F--SECGVATYVWSMVMAYDSTKLAR-----APQSWADFWN--VR-EFPGK-RGLRKGAKYTLEVALLADGVKAEDLYKVLATPEGVSRAFAKLDQLKPNI-QWWEAGAQPPQWLAAGDVVMSAAYNGRIAAAQK------EGVKLAIVWP--GSLYDPEYWAVVKGTPNKALAEKFIAFASQPQTQKVFSEQIPYGPVHKGTLALLPKTVQE--ALPTAPANLEGARAVDAEFWVDHGEELEQRFNAWAAR |
| 3TTN Chain:A ((6-339)) | -------------------------------SLHIYNWTDY----IAPTTLKDFTKESGIDVSYDVF-DSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWK-NLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPN----THDPK-DYKKAEEVLTKVRPYVSYF--HSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYV-SAVLPAKVLRLQTRTWTRIK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TTN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88636 for 2585 contacts (-34.3/contact) +
2D Compatibility (PS) -32700 + (NN) -12452 + (LL) 4724
1D Compatibility (HY) -14800 + (ID) 2550
Total energy: -146414.0 ( -56.64 by residue)
QMean score : 0.335
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