Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSSRPYLVRALYEWIVDNDCTPHILVNAEFAGVKVPPGYASDGQIVLNVSPSAVRHLHMDNEAVSFEGRFGGVAQSLYIPALAVMAIYARENGQGMVFDLEQPGPVDDEPGDDDGGPSDEPPRPSGRPSLKVVK
1OX9 Chain:D ((3-104))
LTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPE---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OX9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88835 for 708 contacts (-125.5/contact) +
2D Compatibility (PS) -11090 + (NN) -4406 + (LL) -1112
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -120893.0 ( -170.75 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1OX9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OX9-query.scw
PDB file :
Tito_Scwrl_1OX9.pdb
: