Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAVVIMAFGSIQVQGSLLEFGQMILFKTGKRADVSYGFYGCHCGVGGRGSPKDATDWCCVTHDCCYNRLEKRGCGTKFLTYKFSYRGGQISCSTNQDSCRKQLCQCDKAAAECFARNKKSYSLKYQFYPNKFCKGKTPSC
1J1A Chain:B ((1-124))
---------------------NLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCA-KQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
General information:
TITO was launched using:
RESULT:
Template:
1J1A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44175 for 917 contacts (-48.2/contact) +
2D Compatibility (PS) -13486 + (NN) -9897 + (LL) 2700
1D Compatibility (HY) -13600 + (ID) 4500
Total energy: -82958.0 ( -90.47 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1J1A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J1A-query.scw
PDB file :
Tito_Scwrl_1J1A.pdb
: