Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
1DR1 Chain:A ((1-186))
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSV---
General information:
TITO was launched using:
RESULT:
Template:
1DR1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125435 for 1378 contacts (-91.0/contact) +
2D Compatibility (PS) -20526 + (NN) -10772 + (LL) 440
1D Compatibility (HY) -26800 + (ID) 9250
Total energy: -192343.0 ( -139.58 by residue)
QMean score : 0.766
(partial model without unconserved sides chains):
PDB file :
Tito_1DR1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DR1-query.scw
PDB file :
Tito_Scwrl_1DR1.pdb
: