Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMYSKLLTLTTLLLPTALALPSLVERACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
6GSP Chain:A ((1-104))
--------------------------ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
General information:
TITO was launched using:
RESULT:
Template:
6GSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49017 for 763 contacts (-64.2/contact) +
2D Compatibility (PS) -11866 + (NN) -9588 + (LL) 2712
1D Compatibility (HY) -12400 + (ID) 5150
Total energy: -85309.0 ( -111.81 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_6GSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-6GSP-query.scw
PDB file :
Tito_Scwrl_6GSP.pdb
: